IMAGINE
improved_docs
Contents:
Installation and dependencies
Design overview
IMAGINE Components
Constraining parameters
Model comparison
Parallelisation
Tutorials:
Basic elements of an IMAGINE pipeline
Including new observational data
Fields and Factories
Designing and using Simulators
The Hammurabi simulator
Priors
Masking HEALPix datasets
Example pipeline
API Reference
imagine package
IMAGINE
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__call__() (imagine.fields.field_factory.FieldFactory method)
(imagine.fields.FieldFactory method)
(imagine.likelihoods.Likelihood method)
(imagine.likelihoods.likelihood.Likelihood method)
(imagine.observables.Masks method)
(imagine.observables.observable_dict.Masks method)
(imagine.pipelines.Pipeline method)
(imagine.pipelines.pipeline.Pipeline method)
(imagine.priors.FlatPrior method)
(imagine.priors.Prior method)
(imagine.priors.basic_priors.FlatPrior method)
(imagine.priors.prior.Prior method)
(imagine.simulators.Simulator method)
(imagine.simulators.simulator.Simulator method)
A
active_parameters (imagine.pipelines.Pipeline attribute)
(imagine.pipelines.pipeline.Pipeline attribute)
adjust_error_intervals() (in module imagine.tools.misc)
ALLOWED_GRID_TYPES (imagine.simulators.Hammurabi attribute)
(imagine.simulators.hammurabi.Hammurabi attribute)
allowed_grid_types (imagine.simulators.Simulator attribute)
(imagine.simulators.simulator.Simulator attribute)
ALLOWED_GRID_TYPES (imagine.simulators.test_simulator.TestSimulator attribute)
(imagine.simulators.TestSimulator attribute)
append() (imagine.observables.Covariances method)
(imagine.observables.Masks method)
(imagine.observables.Measurements method)
(imagine.observables.Observable method)
(imagine.observables.ObservableDict method)
(imagine.observables.Simulations method)
(imagine.observables.observable.Observable method)
(imagine.observables.observable_dict.Covariances method)
(imagine.observables.observable_dict.Masks method)
(imagine.observables.observable_dict.Measurements method)
(imagine.observables.observable_dict.ObservableDict method)
(imagine.observables.observable_dict.Simulations method)
archive (imagine.observables.observable_dict.ObservableDict attribute)
(imagine.observables.ObservableDict attribute)
B
BaseClass (class in imagine.tools)
(class in imagine.tools.class_tools)
BaseGrid (class in imagine.fields)
(class in imagine.fields.grid)
BIC (imagine.pipelines.Pipeline attribute)
(imagine.pipelines.pipeline.Pipeline attribute)
box (imagine.fields.BaseGrid attribute)
(imagine.fields.grid.BaseGrid attribute)
BregLSA (class in imagine.fields.hamx)
(class in imagine.fields.hamx.breg_lsa)
BregLSAFactory (class in imagine.fields.hamx)
(class in imagine.fields.hamx.breg_lsa)
BrndES (class in imagine.fields.hamx)
(class in imagine.fields.hamx.brnd_es)
BrndESFactory (class in imagine.fields.hamx)
(class in imagine.fields.hamx.brnd_es)
C
call() (imagine.likelihoods.ensemble_likelihood.EnsembleLikelihood method)
(imagine.likelihoods.EnsembleLikelihood method)
(imagine.likelihoods.EnsembleLikelihoodDiagonal method)
(imagine.likelihoods.Likelihood method)
(imagine.likelihoods.SimpleLikelihood method)
(imagine.likelihoods.ensemble_likelihood.EnsembleLikelihoodDiagonal method)
(imagine.likelihoods.likelihood.Likelihood method)
(imagine.likelihoods.simple_likelihood.SimpleLikelihood method)
(imagine.pipelines.DynestyPipeline method)
(imagine.pipelines.MultinestPipeline method)
(imagine.pipelines.Pipeline method)
(imagine.pipelines.UltranestPipeline method)
(imagine.pipelines.dynesty_pipeline.DynestyPipeline method)
(imagine.pipelines.emcee_pipeline.EmceePipeline method)
(imagine.pipelines.multinest_pipeline.MultinestPipeline method)
(imagine.pipelines.pipeline.Pipeline method)
(imagine.pipelines.ultranest_pipeline.UltranestPipeline method)
cdf (imagine.priors.Prior attribute)
(imagine.priors.prior.Prior attribute)
chains_directory (imagine.pipelines.Pipeline attribute)
(imagine.pipelines.pipeline.Pipeline attribute)
clean_chains_directory() (imagine.pipelines.Pipeline method)
(imagine.pipelines.pipeline.Pipeline method)
compute_field() (imagine.fields.base_fields.DummyField method)
(imagine.fields.ConstantMagneticField method)
(imagine.fields.ConstantThermalElectrons method)
(imagine.fields.CosThermalElectronDensity method)
(imagine.fields.DummyField method)
(imagine.fields.ExponentialThermalElectrons method)
(imagine.fields.Field method)
(imagine.fields.NaiveGaussianMagneticField method)
(imagine.fields.RandomThermalElectrons method)
(imagine.fields.basic_fields.ConstantMagneticField method)
(imagine.fields.basic_fields.ConstantThermalElectrons method)
(imagine.fields.basic_fields.ExponentialThermalElectrons method)
(imagine.fields.basic_fields.RandomThermalElectrons method)
(imagine.fields.field.Field method)
(imagine.fields.test_field.CosThermalElectronDensity method)
(imagine.fields.test_field.NaiveGaussianMagneticField method)
ConstantMagneticField (class in imagine.fields)
(class in imagine.fields.basic_fields)
ConstantThermalElectrons (class in imagine.fields)
(class in imagine.fields.basic_fields)
coordinates (imagine.fields.BaseGrid attribute)
(imagine.fields.grid.BaseGrid attribute)
corner_plot() (imagine.pipelines.Pipeline method)
(imagine.pipelines.pipeline.Pipeline method)
(in module imagine.tools.visualization)
cos_phi (imagine.fields.BaseGrid attribute)
(imagine.fields.grid.BaseGrid attribute)
cos_theta (imagine.fields.BaseGrid attribute)
(imagine.fields.grid.BaseGrid attribute)
CosThermalElectronDensity (class in imagine.fields)
(class in imagine.fields.test_field)
CosThermalElectronDensityFactory (class in imagine.fields)
(class in imagine.fields.test_field)
cov (imagine.observables.Measurements attribute)
(imagine.observables.observable_dict.Measurements attribute)
covariance_dict (imagine.likelihoods.Likelihood attribute)
(imagine.likelihoods.likelihood.Likelihood attribute)
Covariances (class in imagine.observables)
(class in imagine.observables.observable_dict)
CREAna (class in imagine.fields.hamx)
(class in imagine.fields.hamx.cre_analytic)
CREAnaFactory (class in imagine.fields.hamx)
(class in imagine.fields.hamx.cre_analytic)
CustomPrior (class in imagine.priors)
(class in imagine.priors.prior)
D
d (imagine.fields.CosThermalElectronDensityFactory attribute)
(imagine.fields.test_field.CosThermalElectronDensityFactory attribute)
data (imagine.observables.Dataset attribute)
(imagine.observables.DispersionMeasureHEALPixDataset attribute)
(imagine.observables.FaradayDepthHEALPixDataset attribute)
(imagine.observables.Observable attribute)
(imagine.observables.SynchrotronHEALPixDataset attribute)
(imagine.observables.dataset.Dataset attribute)
(imagine.observables.dataset.DispersionMeasureHEALPixDataset attribute)
(imagine.observables.dataset.FaradayDepthHEALPixDataset attribute)
(imagine.observables.dataset.SynchrotronHEALPixDataset attribute)
(imagine.observables.observable.Observable attribute)
data_description (imagine.fields.base_fields.DummyField attribute)
(imagine.fields.DummyField attribute)
(imagine.fields.Field attribute)
(imagine.fields.MagneticField attribute)
(imagine.fields.ThermalElectronDensityField attribute)
(imagine.fields.base_fields.MagneticField attribute)
(imagine.fields.base_fields.ThermalElectronDensityField attribute)
(imagine.fields.field.Field attribute)
data_shape (imagine.fields.base_fields.DummyField attribute)
(imagine.fields.DummyField attribute)
(imagine.fields.Field attribute)
(imagine.fields.MagneticField attribute)
(imagine.fields.ThermalElectronDensityField attribute)
(imagine.fields.base_fields.MagneticField attribute)
(imagine.fields.base_fields.ThermalElectronDensityField attribute)
(imagine.fields.field.Field attribute)
Dataset (class in imagine.observables)
(class in imagine.observables.dataset)
DEFAULT_PARAMETERS (imagine.fields.CosThermalElectronDensityFactory attribute)
default_parameters (imagine.fields.field_factory.FieldFactory attribute)
(imagine.fields.FieldFactory attribute)
DEFAULT_PARAMETERS (imagine.fields.hamx.breg_lsa.BregLSAFactory attribute)
(imagine.fields.NaiveGaussianMagneticFieldFactory attribute)
(imagine.fields.hamx.BregLSAFactory attribute)
(imagine.fields.hamx.BrndESFactory attribute)
(imagine.fields.hamx.CREAnaFactory attribute)
(imagine.fields.hamx.TEregYMW16Factory attribute)
(imagine.fields.hamx.brnd_es.BrndESFactory attribute)
(imagine.fields.hamx.cre_analytic.CREAnaFactory attribute)
(imagine.fields.hamx.tereg_ymw16.TEregYMW16Factory attribute)
(imagine.fields.test_field.CosThermalElectronDensityFactory attribute)
(imagine.fields.test_field.NaiveGaussianMagneticFieldFactory attribute)
dependencies_list (imagine.fields.Field attribute)
(imagine.fields.field.Field attribute)
diagonal_cov() (in module imagine.tools)
(in module imagine.tools.covariance_estimator)
diagonal_mcov() (in module imagine.tools)
(in module imagine.tools.covariance_estimator)
DispersionMeasureHEALPixDataset (class in imagine.observables)
(class in imagine.observables.dataset)
distribute_ensemble (imagine.pipelines.Pipeline attribute)
(imagine.pipelines.pipeline.Pipeline attribute)
distribute_matrix() (in module imagine.tools)
(in module imagine.tools.parallel_ops)
dtype (imagine.observables.Observable attribute)
(imagine.observables.observable.Observable attribute)
DummyField (class in imagine.fields)
(class in imagine.fields.base_fields)
DynestyPipeline (class in imagine.pipelines)
(class in imagine.pipelines.dynesty_pipeline)
E
EmceePipeline (class in imagine.pipelines.emcee_pipeline)
empirical_cov() (in module imagine.tools)
(in module imagine.tools.covariance_estimator)
empirical_mcov() (in module imagine.tools)
(in module imagine.tools.covariance_estimator)
ensemble_mean (imagine.observables.Observable attribute)
(imagine.observables.observable.Observable attribute)
ensemble_seed_generator() (in module imagine.tools)
(in module imagine.tools.random_seed)
ensemble_seeds (imagine.fields.Field attribute)
(imagine.fields.field.Field attribute)
ensemble_size (imagine.pipelines.Pipeline attribute)
(imagine.pipelines.pipeline.Pipeline attribute)
(imagine.simulators.Simulator attribute)
(imagine.simulators.simulator.Simulator attribute)
EnsembleLikelihood (class in imagine.likelihoods)
(class in imagine.likelihoods.ensemble_likelihood)
EnsembleLikelihoodDiagonal (class in imagine.likelihoods)
(class in imagine.likelihoods.ensemble_likelihood)
estimate_covariances() (imagine.observables.observable_dict.Simulations method)
(imagine.observables.Simulations method)
evidence_report() (imagine.pipelines.Pipeline method)
(imagine.pipelines.pipeline.Pipeline method)
exp_mapper() (in module imagine.tools)
(in module imagine.tools.carrier_mapper)
ExponentialThermalElectrons (class in imagine.fields)
(class in imagine.fields.basic_fields)
F
factory_list (imagine.pipelines.Pipeline attribute)
(imagine.pipelines.pipeline.Pipeline attribute)
FaradayDepthHEALPixDataset (class in imagine.observables)
(class in imagine.observables.dataset)
Field (class in imagine.fields)
(class in imagine.fields.field)
field_checklist (imagine.fields.base_fields.DummyField attribute)
(imagine.fields.DummyField attribute)
FIELD_CHECKLIST (imagine.fields.hamx.breg_lsa.BregLSA attribute)
(imagine.fields.hamx.BregLSA attribute)
(imagine.fields.hamx.brnd_es.BrndES attribute)
field_checklist (imagine.fields.hamx.brnd_es.BrndES attribute)
FIELD_CHECKLIST (imagine.fields.hamx.BrndES attribute)
field_checklist (imagine.fields.hamx.BrndES attribute)
FIELD_CHECKLIST (imagine.fields.hamx.cre_analytic.CREAna attribute)
(imagine.fields.hamx.CREAna attribute)
(imagine.fields.hamx.TEregYMW16 attribute)
(imagine.fields.hamx.tereg_ymw16.TEregYMW16 attribute)
FIELD_CLASS (imagine.fields.CosThermalElectronDensityFactory attribute)
field_class (imagine.fields.field_factory.FieldFactory attribute)
(imagine.fields.FieldFactory attribute)
FIELD_CLASS (imagine.fields.hamx.breg_lsa.BregLSAFactory attribute)
(imagine.fields.NaiveGaussianMagneticFieldFactory attribute)
(imagine.fields.hamx.BregLSAFactory attribute)
(imagine.fields.hamx.BrndESFactory attribute)
(imagine.fields.hamx.CREAnaFactory attribute)
(imagine.fields.hamx.TEregYMW16Factory attribute)
(imagine.fields.hamx.brnd_es.BrndESFactory attribute)
(imagine.fields.hamx.cre_analytic.CREAnaFactory attribute)
(imagine.fields.hamx.tereg_ymw16.TEregYMW16Factory attribute)
(imagine.fields.test_field.CosThermalElectronDensityFactory attribute)
(imagine.fields.test_field.NaiveGaussianMagneticFieldFactory attribute)
field_name (imagine.fields.field_factory.FieldFactory attribute)
(imagine.fields.FieldFactory attribute)
field_type (imagine.fields.field_factory.FieldFactory attribute)
(imagine.fields.FieldFactory attribute)
field_units (imagine.fields.field_factory.FieldFactory attribute)
(imagine.fields.FieldFactory attribute)
FieldFactory (class in imagine.fields)
(class in imagine.fields.field_factory)
fields (imagine.simulators.Simulator attribute)
(imagine.simulators.simulator.Simulator attribute)
FlatPrior (class in imagine.priors)
(class in imagine.priors.basic_priors)
frequency (imagine.observables.Dataset attribute)
(imagine.observables.dataset.Dataset attribute)
G
GaussianPrior (class in imagine.priors)
(class in imagine.priors.basic_priors)
generate_coordinates() (imagine.fields.BaseGrid method)
(imagine.fields.UniformGrid method)
(imagine.fields.grid.BaseGrid method)
(imagine.fields.grid.UniformGrid method)
get_BIC() (imagine.pipelines.Pipeline method)
(imagine.pipelines.pipeline.Pipeline method)
get_data() (imagine.fields.base_fields.DummyField method)
(imagine.fields.DummyField method)
(imagine.fields.Field method)
(imagine.fields.field.Field method)
get_intermediate_results() (imagine.pipelines.emcee_pipeline.EmceePipeline method)
(imagine.pipelines.MultinestPipeline method)
(imagine.pipelines.Pipeline method)
(imagine.pipelines.multinest_pipeline.MultinestPipeline method)
(imagine.pipelines.pipeline.Pipeline method)
get_MAP() (imagine.pipelines.Pipeline method)
(imagine.pipelines.pipeline.Pipeline method)
get_par_names() (imagine.pipelines.Pipeline method)
(imagine.pipelines.pipeline.Pipeline method)
global_data (imagine.observables.Observable attribute)
(imagine.observables.observable.Observable attribute)
grid (imagine.fields.field_factory.FieldFactory attribute)
(imagine.fields.FieldFactory attribute)
(imagine.simulators.Simulator attribute)
(imagine.simulators.simulator.Simulator attribute)
grids (imagine.simulators.Simulator attribute)
(imagine.simulators.simulator.Simulator attribute)
H
Hammurabi (class in imagine.simulators)
(class in imagine.simulators.hammurabi)
hamx_path (imagine.simulators.Hammurabi attribute)
(imagine.simulators.hammurabi.Hammurabi attribute)
HEALPixDataset (class in imagine.observables)
(class in imagine.observables.dataset)
I
ImageDataset (class in imagine.observables)
(class in imagine.observables.dataset)
imagine (module)
imagine.fields (module)
imagine.fields.base_fields (module)
imagine.fields.basic_fields (module)
imagine.fields.field (module)
imagine.fields.field_factory (module)
imagine.fields.grid (module)
imagine.fields.hamx (module)
imagine.fields.hamx.breg_lsa (module)
imagine.fields.hamx.brnd_es (module)
imagine.fields.hamx.cre_analytic (module)
imagine.fields.hamx.tereg_ymw16 (module)
imagine.fields.test_field (module)
imagine.likelihoods (module)
imagine.likelihoods.ensemble_likelihood (module)
imagine.likelihoods.likelihood (module)
imagine.likelihoods.simple_likelihood (module)
imagine.observables (module)
imagine.observables.dataset (module)
imagine.observables.observable (module)
imagine.observables.observable_dict (module)
imagine.pipelines (module)
imagine.pipelines.dynesty_pipeline (module)
imagine.pipelines.emcee_pipeline (module)
imagine.pipelines.multinest_pipeline (module)
imagine.pipelines.pipeline (module)
imagine.pipelines.ultranest_pipeline (module)
imagine.priors (module)
imagine.priors.basic_priors (module)
imagine.priors.prior (module)
imagine.simulators (module)
imagine.simulators.hammurabi (module)
imagine.simulators.simulator (module)
imagine.simulators.test_simulator (module)
imagine.tools (module)
imagine.tools.carrier_mapper (module)
imagine.tools.class_tools (module)
imagine.tools.config (module)
imagine.tools.covariance_estimator (module)
imagine.tools.io (module)
imagine.tools.masker (module)
imagine.tools.misc (module)
imagine.tools.mpi_helper (module)
imagine.tools.parallel_ops (module)
imagine.tools.random_seed (module)
imagine.tools.timer (module)
imagine.tools.visualization (module)
initialize_ham_xml() (imagine.simulators.Hammurabi method)
(imagine.simulators.hammurabi.Hammurabi method)
inv_cdf (imagine.priors.Prior attribute)
(imagine.priors.prior.Prior attribute)
is_notebook() (in module imagine.tools.misc)
K
k (imagine.fields.CosThermalElectronDensityFactory attribute)
(imagine.fields.test_field.CosThermalElectronDensityFactory attribute)
key (imagine.observables.Dataset attribute)
(imagine.observables.DispersionMeasureHEALPixDataset attribute)
(imagine.observables.FaradayDepthHEALPixDataset attribute)
(imagine.observables.SynchrotronHEALPixDataset attribute)
(imagine.observables.dataset.Dataset attribute)
(imagine.observables.dataset.DispersionMeasureHEALPixDataset attribute)
(imagine.observables.dataset.FaradayDepthHEALPixDataset attribute)
(imagine.observables.dataset.SynchrotronHEALPixDataset attribute)
keys() (imagine.observables.observable_dict.ObservableDict method)
(imagine.observables.ObservableDict method)
L
Likelihood (class in imagine.likelihoods)
(class in imagine.likelihoods.likelihood)
likelihood (imagine.pipelines.Pipeline attribute)
(imagine.pipelines.pipeline.Pipeline attribute)
likelihood_convergence_report() (imagine.pipelines.Pipeline method)
(imagine.pipelines.pipeline.Pipeline method)
likelihood_rescaler (imagine.pipelines.Pipeline attribute)
(imagine.pipelines.pipeline.Pipeline attribute)
load() (imagine.pipelines.Pipeline class method)
(imagine.pipelines.pipeline.Pipeline class method)
load_pipeline() (in module imagine)
(in module imagine.tools)
(in module imagine.tools.io)
log_evidence (imagine.pipelines.Pipeline attribute)
(imagine.pipelines.pipeline.Pipeline attribute)
log_evidence_err (imagine.pipelines.Pipeline attribute)
(imagine.pipelines.pipeline.Pipeline attribute)
log_probability_unnormalized() (imagine.pipelines.Pipeline method)
(imagine.pipelines.pipeline.Pipeline method)
M
MagneticField (class in imagine.fields)
(class in imagine.fields.base_fields)
MAP_model (imagine.pipelines.Pipeline attribute)
(imagine.pipelines.pipeline.Pipeline attribute)
MAP_simulation (imagine.pipelines.Pipeline attribute)
(imagine.pipelines.pipeline.Pipeline attribute)
mask_cov() (in module imagine.tools)
(in module imagine.tools.masker)
mask_dict (imagine.likelihoods.Likelihood attribute)
(imagine.likelihoods.likelihood.Likelihood attribute)
mask_obs() (in module imagine.tools)
(in module imagine.tools.masker)
mask_var() (in module imagine.tools)
(in module imagine.tools.masker)
Masks (class in imagine.observables)
(class in imagine.observables.observable_dict)
masks (imagine.simulators.Hammurabi attribute)
(imagine.simulators.hammurabi.Hammurabi attribute)
master_seed (imagine.pipelines.Pipeline attribute)
(imagine.pipelines.pipeline.Pipeline attribute)
measurement_dict (imagine.likelihoods.Likelihood attribute)
(imagine.likelihoods.likelihood.Likelihood attribute)
Measurements (class in imagine.observables)
(class in imagine.observables.observable_dict)
median_model (imagine.pipelines.Pipeline attribute)
(imagine.pipelines.pipeline.Pipeline attribute)
median_simulation (imagine.pipelines.Pipeline attribute)
(imagine.pipelines.pipeline.Pipeline attribute)
mpi_arrange() (in module imagine.tools)
(in module imagine.tools.mpi_helper)
mpi_diag() (in module imagine.tools)
(in module imagine.tools.mpi_helper)
mpi_distribute_matrix() (in module imagine.tools)
(in module imagine.tools.mpi_helper)
mpi_eye() (in module imagine.tools)
(in module imagine.tools.mpi_helper)
mpi_global() (in module imagine.tools)
(in module imagine.tools.mpi_helper)
mpi_local() (in module imagine.tools)
(in module imagine.tools.mpi_helper)
mpi_lu_solve() (in module imagine.tools)
(in module imagine.tools.mpi_helper)
mpi_mean() (in module imagine.tools)
(in module imagine.tools.mpi_helper)
mpi_mult() (in module imagine.tools)
(in module imagine.tools.mpi_helper)
mpi_new_diag() (in module imagine.tools)
(in module imagine.tools.mpi_helper)
mpi_prosecutor() (in module imagine.tools)
(in module imagine.tools.mpi_helper)
mpi_shape() (in module imagine.tools)
(in module imagine.tools.mpi_helper)
mpi_slogdet() (in module imagine.tools)
(in module imagine.tools.mpi_helper)
mpi_trace() (in module imagine.tools)
(in module imagine.tools.mpi_helper)
mpi_trans() (in module imagine.tools)
(in module imagine.tools.mpi_helper)
MultinestPipeline (class in imagine.pipelines)
(class in imagine.pipelines.multinest_pipeline)
N
NaiveGaussianMagneticField (class in imagine.fields)
(class in imagine.fields.test_field)
NaiveGaussianMagneticFieldFactory (class in imagine.fields)
(class in imagine.fields.test_field)
NAME (imagine.fields.basic_fields.ConstantMagneticField attribute)
(imagine.fields.ConstantMagneticField attribute)
(imagine.fields.ConstantThermalElectrons attribute)
(imagine.fields.CosThermalElectronDensity attribute)
(imagine.fields.ExponentialThermalElectrons attribute)
(imagine.fields.basic_fields.ConstantThermalElectrons attribute)
(imagine.fields.basic_fields.ExponentialThermalElectrons attribute)
(imagine.fields.basic_fields.RandomThermalElectrons attribute)
name (imagine.fields.Field attribute)
(imagine.fields.FieldFactory attribute)
(imagine.fields.field.Field attribute)
(imagine.fields.field_factory.FieldFactory attribute)
NAME (imagine.fields.hamx.breg_lsa.BregLSA attribute)
(imagine.fields.NaiveGaussianMagneticField attribute)
(imagine.fields.RandomThermalElectrons attribute)
(imagine.fields.hamx.BregLSA attribute)
(imagine.fields.hamx.BrndES attribute)
(imagine.fields.hamx.CREAna attribute)
(imagine.fields.hamx.TEregYMW16 attribute)
(imagine.fields.hamx.brnd_es.BrndES attribute)
(imagine.fields.hamx.cre_analytic.CREAna attribute)
(imagine.fields.hamx.tereg_ymw16.TEregYMW16 attribute)
(imagine.fields.test_field.CosThermalElectronDensity attribute)
(imagine.fields.test_field.NaiveGaussianMagneticField attribute)
name (imagine.observables.Dataset attribute)
(imagine.observables.dataset.Dataset attribute)
NAME (imagine.observables.dataset.DispersionMeasureHEALPixDataset attribute)
(imagine.observables.DispersionMeasureHEALPixDataset attribute)
(imagine.observables.FaradayDepthHEALPixDataset attribute)
(imagine.observables.SynchrotronHEALPixDataset attribute)
(imagine.observables.dataset.FaradayDepthHEALPixDataset attribute)
(imagine.observables.dataset.SynchrotronHEALPixDataset attribute)
O
oas_cov() (in module imagine.tools)
(in module imagine.tools.covariance_estimator)
oas_mcov() (in module imagine.tools)
(in module imagine.tools.covariance_estimator)
Observable (class in imagine.observables)
(class in imagine.observables.observable)
ObservableDict (class in imagine.observables)
(class in imagine.observables.observable_dict)
observables (imagine.simulators.Simulator attribute)
(imagine.simulators.simulator.Simulator attribute)
OPTIONAL_FIELD_TYPES (imagine.simulators.Hammurabi attribute)
(imagine.simulators.hammurabi.Hammurabi attribute)
optional_field_types (imagine.simulators.Simulator attribute)
(imagine.simulators.simulator.Simulator attribute)
output_units (imagine.simulators.Simulator attribute)
(imagine.simulators.simulator.Simulator attribute)
P
parameter_central_value() (imagine.pipelines.Pipeline method)
(imagine.pipelines.pipeline.Pipeline method)
PARAMETER_NAMES (imagine.fields.base_fields.DummyField attribute)
parameter_names (imagine.fields.base_fields.DummyField attribute)
PARAMETER_NAMES (imagine.fields.basic_fields.ConstantMagneticField attribute)
(imagine.fields.ConstantMagneticField attribute)
(imagine.fields.ConstantThermalElectrons attribute)
(imagine.fields.CosThermalElectronDensity attribute)
(imagine.fields.DummyField attribute)
(imagine.fields.basic_fields.ConstantThermalElectrons attribute)
(imagine.fields.basic_fields.ExponentialThermalElectrons attribute)
(imagine.fields.basic_fields.RandomThermalElectrons attribute)
parameter_names (imagine.fields.DummyField attribute)
PARAMETER_NAMES (imagine.fields.ExponentialThermalElectrons attribute)
parameter_names (imagine.fields.Field attribute)
(imagine.fields.field.Field attribute)
PARAMETER_NAMES (imagine.fields.NaiveGaussianMagneticField attribute)
(imagine.fields.RandomThermalElectrons attribute)
(imagine.fields.test_field.CosThermalElectronDensity attribute)
(imagine.fields.test_field.NaiveGaussianMagneticField attribute)
parameter_ranges (imagine.fields.field_factory.FieldFactory attribute)
(imagine.fields.FieldFactory attribute)
parameters (imagine.fields.Field attribute)
(imagine.fields.field.Field attribute)
pdf() (imagine.priors.Prior method)
(imagine.priors.prior.Prior method)
pdiag() (in module imagine.tools)
(in module imagine.tools.parallel_ops)
peye() (in module imagine.tools)
(in module imagine.tools.parallel_ops)
pglobal() (in module imagine.tools)
(in module imagine.tools.parallel_ops)
phi (imagine.fields.BaseGrid attribute)
(imagine.fields.grid.BaseGrid attribute)
Pipeline (class in imagine.pipelines)
(class in imagine.pipelines.pipeline)
plocal() (in module imagine.tools)
(in module imagine.tools.parallel_ops)
plu_solve() (in module imagine.tools)
(in module imagine.tools.parallel_ops)
pmean() (in module imagine.tools)
(in module imagine.tools.parallel_ops)
pmult() (in module imagine.tools)
(in module imagine.tools.parallel_ops)
pnewdiag() (in module imagine.tools)
(in module imagine.tools.parallel_ops)
posterior_report() (imagine.pipelines.Pipeline method)
(imagine.pipelines.pipeline.Pipeline method)
posterior_summary (imagine.pipelines.Pipeline attribute)
(imagine.pipelines.pipeline.Pipeline attribute)
prepare_fields() (imagine.simulators.Simulator method)
(imagine.simulators.simulator.Simulator method)
prepare_likelihood_convergence_report() (imagine.pipelines.Pipeline method)
(imagine.pipelines.pipeline.Pipeline method)
Prior (class in imagine.priors)
(class in imagine.priors.prior)
prior_correlations (imagine.pipelines.Pipeline attribute)
(imagine.pipelines.pipeline.Pipeline attribute)
prior_pdf() (imagine.pipelines.Pipeline method)
(imagine.pipelines.pipeline.Pipeline method)
prior_transform() (imagine.pipelines.Pipeline method)
(imagine.pipelines.pipeline.Pipeline method)
PRIORS (imagine.fields.CosThermalElectronDensityFactory attribute)
priors (imagine.fields.field_factory.FieldFactory attribute)
(imagine.fields.FieldFactory attribute)
PRIORS (imagine.fields.hamx.breg_lsa.BregLSAFactory attribute)
(imagine.fields.NaiveGaussianMagneticFieldFactory attribute)
(imagine.fields.hamx.BregLSAFactory attribute)
(imagine.fields.hamx.BrndESFactory attribute)
(imagine.fields.hamx.CREAnaFactory attribute)
(imagine.fields.hamx.TEregYMW16Factory attribute)
(imagine.fields.hamx.brnd_es.BrndESFactory attribute)
(imagine.fields.hamx.cre_analytic.CREAnaFactory attribute)
(imagine.fields.hamx.tereg_ymw16.TEregYMW16Factory attribute)
(imagine.fields.test_field.CosThermalElectronDensityFactory attribute)
(imagine.fields.test_field.NaiveGaussianMagneticFieldFactory attribute)
priors (imagine.pipelines.Pipeline attribute)
(imagine.pipelines.pipeline.Pipeline attribute)
progress_report() (imagine.pipelines.Pipeline method)
(imagine.pipelines.pipeline.Pipeline method)
prosecutor() (in module imagine.tools)
(in module imagine.tools.parallel_ops)
pshape() (in module imagine.tools)
(in module imagine.tools.parallel_ops)
pslogdet() (in module imagine.tools)
(in module imagine.tools.parallel_ops)
ptrace() (in module imagine.tools)
(in module imagine.tools.parallel_ops)
ptrans() (in module imagine.tools)
(in module imagine.tools.parallel_ops)
pvar() (in module imagine.tools)
(in module imagine.tools.parallel_ops)
R
r_cylindrical (imagine.fields.BaseGrid attribute)
(imagine.fields.grid.BaseGrid attribute)
r_spherical (imagine.fields.BaseGrid attribute)
(imagine.fields.grid.BaseGrid attribute)
random_type (imagine.pipelines.Pipeline attribute)
(imagine.pipelines.pipeline.Pipeline attribute)
RandomThermalElectrons (class in imagine.fields)
(class in imagine.fields.basic_fields)
record (imagine.tools.Timer attribute)
(imagine.tools.timer.Timer attribute)
register_ensemble_size() (imagine.simulators.Simulator method)
(imagine.simulators.simulator.Simulator method)
register_observables() (imagine.simulators.Simulator method)
(imagine.simulators.simulator.Simulator method)
req_attr() (in module imagine.tools)
(in module imagine.tools.class_tools)
REQ_ATTRS (imagine.fields.base_fields.DummyField attribute)
(imagine.fields.DummyField attribute)
(imagine.fields.Field attribute)
(imagine.fields.field.Field attribute)
(imagine.observables.Dataset attribute)
(imagine.observables.dataset.Dataset attribute)
(imagine.simulators.Simulator attribute)
(imagine.simulators.simulator.Simulator attribute)
(imagine.tools.BaseClass attribute)
(imagine.tools.class_tools.BaseClass attribute)
REQUIRED_FIELD_TYPES (imagine.simulators.Hammurabi attribute)
(imagine.simulators.hammurabi.Hammurabi attribute)
required_field_types (imagine.simulators.Simulator attribute)
(imagine.simulators.simulator.Simulator attribute)
REQUIRED_FIELD_TYPES (imagine.simulators.test_simulator.TestSimulator attribute)
(imagine.simulators.TestSimulator attribute)
resolution (imagine.fields.BaseGrid attribute)
(imagine.fields.FieldFactory attribute)
(imagine.fields.field_factory.FieldFactory attribute)
(imagine.fields.grid.BaseGrid attribute)
run_directory (imagine.pipelines.Pipeline attribute)
(imagine.pipelines.pipeline.Pipeline attribute)
rw_flag (imagine.observables.Observable attribute)
(imagine.observables.observable.Observable attribute)
S
sampler_supports_mpi (imagine.pipelines.Pipeline attribute)
(imagine.pipelines.pipeline.Pipeline attribute)
samples (imagine.pipelines.Pipeline attribute)
(imagine.pipelines.pipeline.Pipeline attribute)
sampling_controllers (imagine.pipelines.Pipeline attribute)
(imagine.pipelines.pipeline.Pipeline attribute)
save() (imagine.pipelines.Pipeline method)
(imagine.pipelines.pipeline.Pipeline method)
save_pipeline() (in module imagine)
(in module imagine.tools)
(in module imagine.tools.io)
scipy_distr (imagine.priors.Prior attribute)
(imagine.priors.prior.Prior attribute)
ScipyPrior (class in imagine.priors)
(class in imagine.priors.prior)
seed_generator() (in module imagine.tools)
(in module imagine.tools.random_seed)
set_grid_size() (imagine.fields.hamx.brnd_es.BrndES method)
(imagine.fields.hamx.BrndES method)
shape (imagine.fields.BaseGrid attribute)
(imagine.fields.grid.BaseGrid attribute)
(imagine.observables.Observable attribute)
(imagine.observables.observable.Observable attribute)
show() (imagine.observables.observable_dict.ObservableDict method)
(imagine.observables.ObservableDict method)
show_likelihood_convergence_report() (in module imagine.tools.visualization)
show_observable() (in module imagine.tools.visualization)
show_observable_dict() (in module imagine.tools.visualization)
show_variances() (imagine.observables.Covariances method)
(imagine.observables.observable_dict.Covariances method)
SimpleLikelihood (class in imagine.likelihoods)
(class in imagine.likelihoods.simple_likelihood)
simulate() (imagine.simulators.Hammurabi method)
(imagine.simulators.Simulator method)
(imagine.simulators.TestSimulator method)
(imagine.simulators.hammurabi.Hammurabi method)
(imagine.simulators.simulator.Simulator method)
(imagine.simulators.test_simulator.TestSimulator method)
SIMULATED_QUANTITIES (imagine.simulators.Hammurabi attribute)
(imagine.simulators.hammurabi.Hammurabi attribute)
simulated_quantities (imagine.simulators.Simulator attribute)
(imagine.simulators.simulator.Simulator attribute)
SIMULATED_QUANTITIES (imagine.simulators.test_simulator.TestSimulator attribute)
(imagine.simulators.TestSimulator attribute)
Simulations (class in imagine.observables)
(class in imagine.observables.observable_dict)
Simulator (class in imagine.simulators)
(class in imagine.simulators.simulator)
simulator (imagine.pipelines.Pipeline attribute)
(imagine.pipelines.pipeline.Pipeline attribute)
simulator_controllist (imagine.fields.base_fields.DummyField attribute)
(imagine.fields.DummyField attribute)
SIMULATOR_CONTROLLIST (imagine.fields.hamx.breg_lsa.BregLSA attribute)
(imagine.fields.hamx.BregLSA attribute)
(imagine.fields.hamx.brnd_es.BrndES attribute)
simulator_controllist (imagine.fields.hamx.brnd_es.BrndES attribute)
SIMULATOR_CONTROLLIST (imagine.fields.hamx.BrndES attribute)
simulator_controllist (imagine.fields.hamx.BrndES attribute)
SIMULATOR_CONTROLLIST (imagine.fields.hamx.cre_analytic.CREAna attribute)
(imagine.fields.hamx.CREAna attribute)
(imagine.fields.hamx.TEregYMW16 attribute)
(imagine.fields.hamx.tereg_ymw16.TEregYMW16 attribute)
sin_phi (imagine.fields.BaseGrid attribute)
(imagine.fields.grid.BaseGrid attribute)
sin_theta (imagine.fields.BaseGrid attribute)
(imagine.fields.grid.BaseGrid attribute)
size (imagine.observables.Observable attribute)
(imagine.observables.observable.Observable attribute)
STOCHASTIC_FIELD (imagine.fields.basic_fields.RandomThermalElectrons attribute)
stochastic_field (imagine.fields.Field attribute)
(imagine.fields.field.Field attribute)
STOCHASTIC_FIELD (imagine.fields.NaiveGaussianMagneticField attribute)
(imagine.fields.RandomThermalElectrons attribute)
(imagine.fields.test_field.NaiveGaussianMagneticField attribute)
sub_sim() (imagine.observables.observable_dict.Simulations method)
(imagine.observables.Simulations method)
SUPPORTS_MPI (imagine.pipelines.emcee_pipeline.EmceePipeline attribute)
(imagine.pipelines.MultinestPipeline attribute)
(imagine.pipelines.UltranestPipeline attribute)
(imagine.pipelines.multinest_pipeline.MultinestPipeline attribute)
(imagine.pipelines.ultranest_pipeline.UltranestPipeline attribute)
SynchrotronHEALPixDataset (class in imagine.observables)
(class in imagine.observables.dataset)
T
TabularDataset (class in imagine.observables)
(class in imagine.observables.dataset)
TEregYMW16 (class in imagine.fields.hamx)
(class in imagine.fields.hamx.tereg_ymw16)
TEregYMW16Factory (class in imagine.fields.hamx)
(class in imagine.fields.hamx.tereg_ymw16)
test() (imagine.pipelines.Pipeline method)
(imagine.pipelines.pipeline.Pipeline method)
TestSimulator (class in imagine.simulators)
(class in imagine.simulators.test_simulator)
ThermalElectronDensityField (class in imagine.fields)
(class in imagine.fields.base_fields)
theta (imagine.fields.BaseGrid attribute)
(imagine.fields.grid.BaseGrid attribute)
tick() (imagine.tools.Timer method)
(imagine.tools.timer.Timer method)
tidy_up() (imagine.pipelines.Pipeline method)
(imagine.pipelines.pipeline.Pipeline method)
Timer (class in imagine.tools)
(class in imagine.tools.timer)
tock() (imagine.tools.Timer method)
(imagine.tools.timer.Timer method)
trace_plot() (in module imagine.tools.visualization)
TYPE (imagine.fields.base_fields.DummyField attribute)
(imagine.fields.DummyField attribute)
(imagine.fields.base_fields.MagneticField attribute)
(imagine.fields.base_fields.ThermalElectronDensityField attribute)
type (imagine.fields.Field attribute)
(imagine.fields.field.Field attribute)
TYPE (imagine.fields.MagneticField attribute)
(imagine.fields.ThermalElectronDensityField attribute)
U
UltranestPipeline (class in imagine.pipelines)
(class in imagine.pipelines.ultranest_pipeline)
UniformGrid (class in imagine.fields)
(class in imagine.fields.grid)
unit_checker() (in module imagine.tools.misc)
UNITS (imagine.fields.base_fields.DummyField attribute)
(imagine.fields.DummyField attribute)
(imagine.fields.base_fields.MagneticField attribute)
(imagine.fields.base_fields.ThermalElectronDensityField attribute)
units (imagine.fields.Field attribute)
(imagine.fields.field.Field attribute)
UNITS (imagine.fields.MagneticField attribute)
(imagine.fields.ThermalElectronDensityField attribute)
unity_mapper() (in module imagine.tools)
(in module imagine.tools.carrier_mapper)
use_common_grid (imagine.simulators.Simulator attribute)
(imagine.simulators.simulator.Simulator attribute)
V
var (imagine.observables.Dataset attribute)
(imagine.observables.Observable attribute)
(imagine.observables.dataset.Dataset attribute)
(imagine.observables.observable.Observable attribute)
W
wrapped_parameters (imagine.pipelines.Pipeline attribute)
(imagine.pipelines.pipeline.Pipeline attribute)
X
x (imagine.fields.BaseGrid attribute)
(imagine.fields.grid.BaseGrid attribute)
xml_path (imagine.simulators.Hammurabi attribute)
(imagine.simulators.hammurabi.Hammurabi attribute)
Y
y (imagine.fields.BaseGrid attribute)
(imagine.fields.grid.BaseGrid attribute)
Z
z (imagine.fields.BaseGrid attribute)
(imagine.fields.grid.BaseGrid attribute)
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